Detailed information of SNP:
|
SNP ID:
sf0712128364(Gbrowse)
Chromosome: chr07 Position: 12128364 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1277 | 50.43% | 49.57% |
| All Indica | 675 | 16.59% | 83.41% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 55 | 30.91% | 69.09% |
| Indica I | 313 | 11.50% | 88.50% |
| Indica II | 184 | 16.85% | 83.15% |
| Indica Intermediate | 178 | 25.28% | 74.72% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712128364 | T->G | INTERGENIC | None |