Detailed information of SNP:
|
SNP ID:
sf0712129036(Gbrowse)
Chromosome: chr07 Position: 12129036 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 97.77% | 2.23% |
| All Indica | 775 | 96.77% | 3.23% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 369 | 97.02% | 2.98% |
| Indica II | 199 | 95.98% | 4.02% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712129036 | A->C | INTERGENIC | None |