Detailed information of SNP:
|
SNP ID:
sf0712337162(Gbrowse)
Chromosome: chr07 Position: 12337162 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 95.31% | 4.69% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 485 | 87.01% | 12.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 84 | 46.43% | 53.57% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712337162 | T->A | LOC_Os07g22070(LOC_Os07g22070.1) | INTRON |