Detailed information of SNP:
|
SNP ID:
sf0712353477(Gbrowse)
Chromosome: chr07 Position: 12353477 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 60.16% | 39.84% |
| All Indica | 795 | 92.83% | 7.17% |
| All Japonica | 473 | 5.71% | 94.29% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 313 | 5.11% | 94.89% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 66 | 7.58% | 92.42% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712353477 | T->C | INTERGENIC | None |