Detailed information of SNP:
|
SNP ID:
sf0712391721(Gbrowse)
Chromosome: chr07 Position: 12391721 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 56.79% | 43.21% |
| All Indica | 796 | 88.94% | 11.06% |
| All Japonica | 490 | 4.29% | 95.71% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 208 | 81.25% | 18.75% |
| Temperate Japonica | 328 | 3.35% | 96.65% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712391721 | G->A | LOC_Os07g22200(LOC_Os07g22200.1) | Non-Synonymous SNP |