Detailed information of SNP:
|
SNP ID:
sf0712393156(Gbrowse)
Chromosome: chr07 Position: 12393156 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 68.28% | 31.72% |
| All Indica | 792 | 98.74% | 1.26% |
| All Japonica | 473 | 12.90% | 87.10% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 204 | 96.08% | 3.92% |
| Temperate Japonica | 313 | 15.02% | 84.98% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712393156 | A->T | LOC_Os07g22200(LOC_Os07g22200.1) | Non-Synonymous SNP |