Detailed information of SNP:
|
SNP ID:
sf0712399835(Gbrowse)
Chromosome: chr07 Position: 12399835 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.50% | 44.50% |
| All Indica | 798 | 87.59% | 12.41% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 89.57% | 10.43% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712399835 | G->C | INTERGENIC | None |