Detailed information of SNP:
|
SNP ID:
sf0712407584(Gbrowse)
Chromosome: chr07 Position: 12407584 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 73.44% | 26.56% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 477 | 27.04% | 72.96% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 321 | 33.33% | 66.67% |
| Tropical Japonica | 88 | 10.23% | 89.77% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712407584 | A->G | INTERGENIC | None |