Detailed information of SNP:
|
SNP ID:
sf0712459839(Gbrowse)
Chromosome: chr07 Position: 12459839 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 78.97% | 21.03% |
| All Indica | 759 | 65.61% | 34.39% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 63 | 76.19% | 23.81% |
| Indica I | 355 | 63.66% | 36.34% |
| Indica II | 208 | 66.35% | 33.65% |
| Indica Intermediate | 196 | 68.37% | 31.63% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712459839 | A->C | INTERGENIC | None |