Detailed information of SNP:
|
SNP ID:
sf0712503923(Gbrowse)
Chromosome: chr07 Position: 12503923 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 53.29% | 46.71% |
| All Indica | 745 | 84.43% | 15.57% |
| All Japonica | 479 | 5.64% | 94.36% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 352 | 87.22% | 12.78% |
| Indica II | 203 | 84.24% | 15.76% |
| Indica Intermediate | 190 | 79.47% | 20.53% |
| Temperate Japonica | 320 | 6.25% | 93.75% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 10 | 10.00% | 90.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712503923 | T->C | LOC_Os07g22310(LOC_Os07g22310.1) | Non-Synonymous SNP |