Detailed information of SNP:
|
SNP ID:
sf0712503956(Gbrowse)
Chromosome: chr07 Position: 12503956 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 90.93% | 9.07% |
| All Indica | 751 | 84.69% | 15.31% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 342 | 82.16% | 17.84% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 202 | 86.14% | 13.86% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712503956 | C->T | LOC_Os07g22310(LOC_Os07g22310.1) | Non-Synonymous SNP |