Detailed information of SNP:
|
SNP ID:
sf0712511349(Gbrowse)
Chromosome: chr07 Position: 12511349 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 55.50% | 44.50% |
| All Indica | 769 | 84.01% | 15.99% |
| All Japonica | 491 | 7.33% | 92.67% |
| Aus | 60 | 91.67% | 8.33% |
| Indica I | 355 | 80.85% | 19.15% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 204 | 78.43% | 21.57% |
| Temperate Japonica | 331 | 7.55% | 92.45% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 66 | 7.58% | 92.42% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712511349 | T->C | INTERGENIC | None |