Detailed information of SNP:
|
SNP ID:
sf0712528800(Gbrowse)
Chromosome: chr07 Position: 12528800 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 94.54% | 5.46% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 457 | 85.56% | 14.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 100.00% | 0.00% |
| Temperate Japonica | 296 | 79.39% | 20.61% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712528800 | T->A | INTERGENIC | None |