Detailed information of SNP:
|
SNP ID:
sf0712598207(Gbrowse)
Chromosome: chr07 Position: 12598207 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 95.24% | 4.76% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 485 | 90.31% | 9.69% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 323 | 86.69% | 13.31% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712598207 | C->G | LOC_Os07g22420(LOC_Os07g22420.1) | Non-Synonymous SNP |