Detailed information of SNP:
|
SNP ID:
sf0712601614(Gbrowse)
Chromosome: chr07 Position: 12601614 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 71.39% | 28.61% |
| All Indica | 793 | 94.96% | 5.04% |
| All Japonica | 492 | 28.86% | 71.14% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 331 | 38.37% | 61.63% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712601614 | T->C | LOC_Os07g22420(LOC_Os07g22420.1) | Non-Synonymous SNP |