Detailed information of SNP:
|
SNP ID:
sf0712640473(Gbrowse)
Chromosome: chr07 Position: 12640473 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 90.50% | 9.50% |
| All Indica | 709 | 82.65% | 17.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 340 | 84.12% | 15.88% |
| Indica II | 183 | 79.23% | 20.77% |
| Indica Intermediate | 186 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712640473 | G->C | LOC_Os07g22480(LOC_Os07g22480.1) | Non-Synonymous SNP |