Detailed information of SNP:
|
SNP ID:
sf0712645810(Gbrowse)
Chromosome: chr07 Position: 12645810 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 54.38% | 45.62% |
| All Indica | 758 | 22.56% | 77.44% |
| All Japonica | 492 | 98.98% | 1.02% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 351 | 20.23% | 79.77% |
| Indica II | 201 | 16.42% | 83.58% |
| Indica Intermediate | 206 | 32.52% | 67.48% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712645810 | A->G | INTERGENIC | None |