Detailed information of SNP:
|
SNP ID:
sf0712647535(Gbrowse)
Chromosome: chr07 Position: 12647535 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 83.77% | 16.23% |
| All Indica | 797 | 93.35% | 6.65% |
| All Japonica | 497 | 69.22% | 30.78% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 57.01% | 42.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712647535 | T->C | INTERGENIC | None |