Detailed information of SNP:
|
SNP ID:
sf0712654390(Gbrowse)
Chromosome: chr07 Position: 12654390 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 80.73% | 19.27% |
| All Indica | 785 | 93.38% | 6.62% |
| All Japonica | 497 | 58.15% | 41.85% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 366 | 92.90% | 7.10% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712654390 | G->C | LOC_Os07g22494(LOC_Os07g22494.3) | INTRON |
| sf0712654390 | G->C | LOC_Os07g22494(LOC_Os07g22494.4) | INTRON |
| sf0712654390 | G->C | LOC_Os07g22494(LOC_Os07g22494.2) | INTRON |
| sf0712654390 | G->C | LOC_Os07g22494(LOC_Os07g22494.1) | INTRON |