Detailed information of SNP:
|
SNP ID:
sf0712716916(Gbrowse)
Chromosome: chr07 Position: 12716916 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 71.82% | 28.18% |
| All Indica | 794 | 97.86% | 2.14% |
| All Japonica | 482 | 30.29% | 69.71% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 206 | 97.09% | 2.91% |
| Temperate Japonica | 321 | 41.74% | 58.26% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712716916 | C->A | LOC_Os07g22600(LOC_Os07g22600.1) | INTRON |
| sf0712716916 | C->A | LOC_Os07g22600(LOC_Os07g22600.2) | INTRON |