Detailed information of SNP:
|
SNP ID:
sf0712820626(Gbrowse)
Chromosome: chr07 Position: 12820626 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 89.59% | 10.41% |
| All Indica | 786 | 97.46% | 2.54% |
| All Japonica | 470 | 75.96% | 24.04% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 198 | 92.93% | 7.07% |
| Temperate Japonica | 313 | 64.86% | 35.14% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 10 | 50.00% | 50.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712820626 | G->A | INTERGENIC | None |