Detailed information of SNP:
|
SNP ID:
sf0712842943(Gbrowse)
Chromosome: chr07 Position: 12842943 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 96.82% | 3.18% |
| All Indica | 735 | 94.29% | 5.71% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 334 | 92.22% | 7.78% |
| Indica II | 199 | 99.50% | 0.50% |
| Indica Intermediate | 202 | 92.57% | 7.43% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712842943 | A->G | LOC_Os07g22760(LOC_Os07g22760.1) | Non-Synonymous SNP |