Detailed information of SNP:
|
SNP ID:
sf0712903462(Gbrowse)
Chromosome: chr07 Position: 12903462 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 52.54% | 47.46% |
| All Indica | 742 | 88.27% | 11.73% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 62 | 51.61% | 48.39% |
| Indica I | 352 | 95.17% | 4.83% |
| Indica II | 193 | 88.08% | 11.92% |
| Indica Intermediate | 197 | 76.14% | 23.86% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712903462 | T->G | INTERGENIC | None |