Detailed information of SNP:
|
SNP ID:
sf0712940993(Gbrowse)
Chromosome: chr07 Position: 12940993 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 50.19% | 49.81% |
| All Indica | 733 | 78.58% | 21.42% |
| All Japonica | 488 | 5.33% | 94.67% |
| Aus | 63 | 71.43% | 28.57% |
| Indica I | 337 | 78.34% | 21.66% |
| Indica II | 200 | 83.00% | 17.00% |
| Indica Intermediate | 196 | 74.49% | 25.51% |
| Temperate Japonica | 327 | 5.50% | 94.50% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712940993 | C->T | LOC_Os07g22960(LOC_Os07g22960.1) | Synonymous |