Detailed information of SNP:
|
SNP ID:
sf0712941758(Gbrowse)
Chromosome: chr07 Position: 12941758 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1235 | 81.54% | 18.46% |
| All Indica | 665 | 70.98% | 29.02% |
| All Japonica | 470 | 95.53% | 4.47% |
| Aus | 55 | 89.09% | 10.91% |
| Indica I | 316 | 72.78% | 27.22% |
| Indica II | 176 | 65.34% | 34.66% |
| Indica Intermediate | 173 | 73.41% | 26.59% |
| Temperate Japonica | 310 | 94.19% | 5.81% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712941758 | G->A | LOC_Os07g22960(LOC_Os07g22960.1) | Non-Synonymous SNP |