Detailed information of SNP:
|
SNP ID:
sf0712946272(Gbrowse)
Chromosome: chr07 Position: 12946272 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1336 | 59.88% | 40.12% |
| All Indica | 746 | 79.22% | 20.78% |
| All Japonica | 485 | 28.04% | 71.96% |
| Aus | 61 | 77.05% | 22.95% |
| Indica I | 345 | 72.46% | 27.54% |
| Indica II | 197 | 84.77% | 15.23% |
| Indica Intermediate | 204 | 85.29% | 14.71% |
| Temperate Japonica | 325 | 37.85% | 62.15% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 3 | 66.67% | 33.33% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712946272 | C->T | LOC_Os07g22960(LOC_Os07g22960.1) | INTRON |