Detailed information of SNP:
|
SNP ID:
sf0712953513(Gbrowse)
Chromosome: chr07 Position: 12953513 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 52.75% | 47.25% |
| All Indica | 737 | 77.20% | 22.80% |
| All Japonica | 494 | 12.75% | 87.25% |
| Aus | 63 | 82.54% | 17.46% |
| Indica I | 339 | 72.86% | 27.14% |
| Indica II | 206 | 83.50% | 16.50% |
| Indica Intermediate | 192 | 78.12% | 21.88% |
| Temperate Japonica | 333 | 12.91% | 87.09% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 8 | 62.50% | 37.50% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712953513 | T->C | LOC_Os07g22970(LOC_Os07g22970.1) | INTRON |