Detailed information of SNP:
|
SNP ID:
sf0712959422(Gbrowse)
Chromosome: chr07 Position: 12959422 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1297 | 77.02% | 22.98% |
| All Indica | 708 | 65.54% | 34.46% |
| All Japonica | 482 | 97.30% | 2.70% |
| Aus | 56 | 51.79% | 48.21% |
| Indica I | 331 | 73.11% | 26.89% |
| Indica II | 193 | 55.96% | 44.04% |
| Indica Intermediate | 184 | 61.96% | 38.04% |
| Temperate Japonica | 323 | 96.90% | 3.10% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712959422 | T->C | INTERGENIC | None |