Detailed information of SNP:
|
SNP ID:
sf0712960664(Gbrowse)
Chromosome: chr07 Position: 12960664 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 86.93% | 13.07% |
| All Indica | 768 | 93.62% | 6.38% |
| All Japonica | 495 | 78.59% | 21.41% |
| Aus | 59 | 83.05% | 16.95% |
| Indica I | 365 | 97.26% | 2.74% |
| Indica II | 205 | 94.63% | 5.37% |
| Indica Intermediate | 198 | 85.86% | 14.14% |
| Temperate Japonica | 333 | 69.97% | 30.03% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712960664 | G->A | INTERGENIC | None |