Detailed information of SNP:
|
SNP ID:
sf0712976471(Gbrowse)
Chromosome: chr07 Position: 12976471 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 95.16% | 4.84% |
| All Indica | 785 | 93.76% | 6.24% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 206 | 91.75% | 8.25% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712976471 | C->A | INTERGENIC | None |