Detailed information of SNP:
|
SNP ID:
sf0712986222(Gbrowse)
Chromosome: chr07 Position: 12986222 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1248 | 71.23% | 28.77% |
| All Indica | 677 | 58.49% | 41.51% |
| All Japonica | 464 | 95.04% | 4.96% |
| Aus | 59 | 40.68% | 59.32% |
| Indica I | 322 | 72.36% | 27.64% |
| Indica II | 180 | 37.78% | 62.22% |
| Indica Intermediate | 175 | 54.29% | 45.71% |
| Temperate Japonica | 310 | 93.87% | 6.13% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 62 | 95.16% | 4.84% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712986222 | T->C | INTERGENIC | None |