Detailed information of SNP:
|
SNP ID:
sf0712998475(Gbrowse)
Chromosome: chr07 Position: 12998475 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1312 | 97.26% | 2.74% |
| All Indica | 761 | 99.21% | 0.79% |
| All Japonica | 437 | 93.36% | 6.64% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 362 | 99.17% | 0.83% |
| Indica II | 196 | 99.49% | 0.51% |
| Indica Intermediate | 203 | 99.01% | 0.99% |
| Temperate Japonica | 285 | 89.82% | 10.18% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0712998475 | C->T | INTERGENIC | None |