Detailed information of SNP:
|
SNP ID:
sf0713003179(Gbrowse)
Chromosome: chr07 Position: 13003179 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 94.15% | 5.85% |
| All Indica | 798 | 91.98% | 8.02% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 93.05% | 6.95% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713003179 | A->G | INTERGENIC | None |