Detailed information of SNP:
|
SNP ID:
sf0713011325(Gbrowse)
Chromosome: chr07 Position: 13011325 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 97.49% | 2.51% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 58 | 98.28% | 1.72% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 6 | 16.67% | 83.33% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713011325 | G->A | INTERGENIC | None |