Detailed information of SNP:
|
SNP ID:
sf0713014403(Gbrowse)
Chromosome: chr07 Position: 13014403 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 50.11% | 49.89% |
| All Indica | 733 | 78.85% | 21.15% |
| All Japonica | 491 | 7.74% | 92.26% |
| Aus | 58 | 51.72% | 48.28% |
| Indica I | 352 | 79.26% | 20.74% |
| Indica II | 194 | 77.32% | 22.68% |
| Indica Intermediate | 187 | 79.68% | 20.32% |
| Temperate Japonica | 331 | 9.37% | 90.63% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 37 | 32.43% | 67.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713014403 | A->T | LOC_Os07g23070(LOC_Os07g23070.1) | SNPs that introduce stop codons |