Detailed information of SNP:
|
SNP ID:
sf0713014496(Gbrowse)
Chromosome: chr07 Position: 13014496 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 96.50% | 3.50% |
| All Indica | 780 | 94.49% | 5.51% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 365 | 96.16% | 3.84% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 203 | 89.66% | 10.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713014496 | G->A | LOC_Os07g23070(LOC_Os07g23070.1) | Non-Synonymous SNP |