Detailed information of SNP:
|
SNP ID:
sf0713015609(Gbrowse)
Chromosome: chr07 Position: 13015609 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1365 | 96.48% | 3.52% |
| All Indica | 757 | 94.45% | 5.55% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 361 | 95.57% | 4.43% |
| Indica II | 193 | 91.71% | 8.29% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713015609 | A->G | LOC_Os07g23070(LOC_Os07g23070.1) | INTRON |