Detailed information of SNP:
|
SNP ID:
sf0713016354(Gbrowse)
Chromosome: chr07 Position: 13016354 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1344 | 90.03% | 9.97% |
| All Indica | 744 | 90.99% | 9.01% |
| All Japonica | 483 | 88.61% | 11.39% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 358 | 94.69% | 5.31% |
| Indica II | 189 | 88.89% | 11.11% |
| Indica Intermediate | 197 | 86.29% | 13.71% |
| Temperate Japonica | 322 | 83.85% | 16.15% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713016354 | A->G | LOC_Os07g23070(LOC_Os07g23070.1) | INTRON |