Detailed information of SNP:
|
SNP ID:
sf0713057378(Gbrowse)
Chromosome: chr07 Position: 13057378 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 97.75% | 2.25% |
| All Indica | 758 | 95.91% | 4.09% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 99.72% | 0.28% |
| Indica II | 201 | 86.57% | 13.43% |
| Indica Intermediate | 203 | 98.52% | 1.48% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713057378 | C->T | LOC_Os07g23169(LOC_Os07g23169.1) | INTRON |