Detailed information of SNP:
|
SNP ID:
sf0713111674(Gbrowse)
Chromosome: chr07 Position: 13111674 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 50.86% | 49.14% |
| All Indica | 776 | 86.60% | 13.40% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 358 | 95.81% | 4.19% |
| Indica II | 208 | 86.54% | 13.46% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713111674 | G->A | INTERGENIC | None |