Detailed information of SNP:
|
SNP ID:
sf0713132138(Gbrowse)
Chromosome: chr07 Position: 13132138 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 53.43% | 46.57% |
| All Indica | 781 | 89.50% | 10.50% |
| All Japonica | 495 | 3.43% | 96.57% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 208 | 84.62% | 15.38% |
| Indica Intermediate | 201 | 84.08% | 15.92% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713132138 | C->A | LOC_Os07g23300(LOC_Os07g23300.1) | INTRON |