Detailed information of SNP:
|
SNP ID:
sf0713141816(Gbrowse)
Chromosome: chr07 Position: 13141816 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 81.70% | 18.30% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 413 | 44.31% | 55.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 280 | 56.07% | 43.93% |
| Tropical Japonica | 72 | 15.28% | 84.72% |
| Japonica Intermediate | 61 | 24.59% | 75.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713141816 | A->G | INTERGENIC | None |