Detailed information of SNP:
|
SNP ID:
sf0713177887(Gbrowse)
Chromosome: chr07 Position: 13177887 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 87.40% | 12.60% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 469 | 63.33% | 36.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 311 | 71.70% | 28.30% |
| Tropical Japonica | 92 | 21.74% | 78.26% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713177887 | T->A | INTERGENIC | None |