Detailed information of SNP:
|
SNP ID:
sf0713259660(Gbrowse)
Chromosome: chr07 Position: 13259660 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 84.04% | 15.96% |
| All Indica | 778 | 72.88% | 27.12% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 364 | 83.52% | 16.48% |
| Indica II | 210 | 77.62% | 22.38% |
| Indica Intermediate | 204 | 49.02% | 50.98% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713259660 | A->G | INTERGENIC | None |