Detailed information of SNP:
|
SNP ID:
sf0713260085(Gbrowse)
Chromosome: chr07 Position: 13260085 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 88.74% | 11.26% |
| All Indica | 768 | 81.51% | 18.49% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 364 | 91.76% | 8.24% |
| Indica II | 207 | 83.09% | 16.91% |
| Indica Intermediate | 197 | 60.91% | 39.09% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713260085 | G->A | INTERGENIC | None |