Detailed information of SNP:
|
SNP ID:
sf0713260986(Gbrowse)
Chromosome: chr07 Position: 13260986 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 88.83% | 11.17% |
| All Indica | 769 | 81.27% | 18.73% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 92.35% | 7.65% |
| Indica II | 210 | 82.86% | 17.14% |
| Indica Intermediate | 193 | 58.55% | 41.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713260986 | G->A | LOC_Os07g23480(LOC_Os07g23480.1) | Synonymous |