Detailed information of SNP:
|
SNP ID:
sf0713261127(Gbrowse)
Chromosome: chr07 Position: 13261127 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 92.35% | 7.65% |
| All Indica | 766 | 87.34% | 12.66% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 96.72% | 3.28% |
| Indica II | 208 | 85.58% | 14.42% |
| Indica Intermediate | 192 | 71.35% | 28.65% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713261127 | A->T | LOC_Os07g23480(LOC_Os07g23480.1) | Synonymous |