Detailed information of SNP:
|
SNP ID:
sf0713261361(Gbrowse)
Chromosome: chr07 Position: 13261361 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 87.18% | 12.82% |
| All Indica | 768 | 78.26% | 21.74% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 361 | 90.86% | 9.14% |
| Indica II | 211 | 79.15% | 20.85% |
| Indica Intermediate | 196 | 54.08% | 45.92% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713261361 | C->A | LOC_Os07g23480(LOC_Os07g23480.1) | Non-Synonymous SNP |