Detailed information of SNP:
|
SNP ID:
sf0713261993(Gbrowse)
Chromosome: chr07 Position: 13261993 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1301 | 76.17% | 23.83% |
| All Indica | 698 | 59.89% | 40.11% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 56 | 67.86% | 32.14% |
| Indica I | 329 | 59.27% | 40.73% |
| Indica II | 179 | 52.51% | 47.49% |
| Indica Intermediate | 190 | 67.89% | 32.11% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713261993 | T->C | LOC_Os07g23480(LOC_Os07g23480.1) | Non-Synonymous SNP |