Detailed information of SNP:
|
SNP ID:
sf0713262566(Gbrowse)
Chromosome: chr07 Position: 13262566 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 90.79% | 9.21% |
| All Indica | 762 | 84.91% | 15.09% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 363 | 93.66% | 6.34% |
| Indica II | 201 | 85.57% | 14.43% |
| Indica Intermediate | 198 | 68.18% | 31.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0713262566 | C->G | LOC_Os07g23480(LOC_Os07g23480.1) | INTRON |